Active Matter Seminar

During the 2021-22 academic year, the CMSA will be hosting a seminar on Active Matter, organized by Farzan Vafa and David Nelson. This seminar will take place bi-weekly on Thursdays at 1:00pm – 2:30pm (Boston time). The meetings will take place virtually on Zoom. To learn how to attend, please fill out this form, or contact Farzan Vafa (

The schedule below will be updated as talks are confirmed.

9/2/2021Andreas Bausch, Technical University of MunichTitle: Eppur si muovono: rotations in active matter

Abstract: Living matter relies on the self organization of its components into higher order structures, on the molecular as well as on the cellular, organ or even organism scale. Collective motion due to active transport processes has been shown to be a promising route for attributing fascinating order formation processes on these different length scales. Here I will present recent results on structure formation on actively transported actin filaments on lipid membranes and vesicles, as well as the cell migration induced structure formation in the developmental phase of mammary gland organoids. For both systems spherical structures with persistent collective rotations are observed.
9/23/2021Krishna Shrinivas, HarvardTitle: The many phases of a cell

Abstract: I will begin by introducing an emerging paradigm of cellular organization – the dynamic compartmentalization of biochemical pathways and molecules by phase separation into distinct and multi-phase condensates. Motivated by this, I will discuss two largely orthogonal problems, united by the theme of phase separation in multi-component and chemically active fluid mixtures.

1. I will propose a theoretical model based on Random-Matrix Theory, validated by phase-field simulations, to characterizes the rich emergent dynamics, compositions, and steady-state properties that underlie multi-phase coexistence in fluid mixtures with many randomly interacting components.

2. Motivated by puzzles in gene-regulation and nuclear organization, I will propose a role for how liquid-like nuclear condensates can be organized and regulated by the active process of RNA synthesis (transcription) and RNA-protein coacervation. Here, I will describe theory and simulations based on a Landau formalism and recent experimental results from collaborators.
9/30/2021Daniel Needleman, HarvardTitle: Cytoskeletal Energetics and Energy Metabolism

Abstract: Life is a nonequilibrium phenomenon. Metabolism provides a continuous flux of energy that dictates the form and function of many subcellular structures. These subcellular structures are active materials, composed of molecules which use chemical energy to perform mechanical work and locally violate detailed balance. One of the most dramatic examples of such a self-organizing structure is the spindle, the cytoskeletal based assembly which segregates chromosomes during cell division. Despite its central role, very little is known about the nonequilibrium thermodynamics of active subcellular matter, such as the spindle. In this talk, I will describe ongoing work from my lab aimed at understanding the flows of energy which drive the nonequilibrium behaviors of the cytoskeleton in vitro and in vivo.
10/14/2021Wai-Tong (Louis) Fan, Indiana UniversityTitle: Stochastic PDE as scaling limits of interacting particle systems

Abstract: Interacting particle models are often employed to gain understanding of the emergence of macroscopic phenomena from microscopic laws of nature. These individual-based models capture fine details, including randomness and discreteness of individuals, that are not considered in continuum models such as partial differential equations (PDE) and integral-differential equations. The challenge is how to simultaneously retain key information in microscopic models as well as efficiency and robustness of macroscopic models. In this talk, I will illustrate how this challenge can be overcome by elucidating the probabilistic connections between models of different levels of detail. These connections explain how stochastic partial differential equations (SPDE) arise naturally from particle models.

I will also present some novel scaling limits including SPDE on graphs and coupled SPDE. These SPDE not only interpolate between particle models and PDE, but also quantify the source and the order of magnitude of stochasticity. Scaling limit theorems and duality formulas are obtained for these SPDE, which connect phenomena across scales and offer insights about the genealogies and the time-asymptotic properties of the underlying population dynamics.
10/28/2021Aissam Ikmi, EMBLTitle: Drivers of Morphological Complexity

Abstract: During development, organisms interact with their natural habitats while undergoing morphological changes, yet we know little about how the interplay between developing systems and their environments impacts animal morphogenesis. Cnidaria, a basal animal lineage that includes sea anemones, corals, hydras, and jellyfish, offers unique insight into the development and evolution of morphological complexity.  In my talk, I will introduce our research on “ethology of morphogenesis,” a novel concept that links the behavior of organisms to the development of their size and shape at both cellular and biophysical levels, opening new perspectives about the design principle of soft-bodied animals. In addition, I will discuss a fascinating feature of cnidarian biology. For humans, our genetic code determines that we will grow two arms and two legs. The same fate is true for all mammals. Similarly, the number of fins of a fish or legs and wings of an insect is embedded in their genetic code. I will describe how sea anemones defy this rule.

Anniek Stokkermans, Aditi Chakrabarti, Ling Wang, Prachiti Moghe, Kaushikaram Subramanian, Petrus Steenbergen, Gregor Mönke, Takashi Hiiragi, Robert Prevedel, L. Mahadevan, and Aissam Ikmi. Ethology of morphogenesis reveals the design principles of cnidarian size and shape development. bioRxiv 2021.08.19.456976

Ikmi A, Steenbergen P, Anzo M, McMullen M, Stokkermans M, Ellington L, and Gibson M (2020). Feeding-dependent tentacle development in the sea anemone Nematostella vectensisNature communications, Sept 02; 11:4399

He S, Del Viso F, Chen C, Ikmi A, Kroesen A, Gibson MC (2018). An axial Hox code controls tissue segmentation and body patterning in Nematostella vectensisScience, Vol. 361, Issue 6409, pp. 1377-1380.
Ikmi A, McKinney SA, Delventhal KM, Gibson MC (2014). TALEN and CRISPR/Cas9 mediated genome editing in the early-branching metazoan Nematostella vectensisNature communications. Nov 24; 5:5486.
11/11/21Nikta Fakhri, MITTitle: Nonreciprocal matter: living chiral crystals

Abstract: Active crystals are highly ordered structures that emerge from the nonequilibrium self-organization of motile objects, and have been widely studied in synthetic and bacterial active matter. In this talk, I will describe how swimming sea star embryos spontaneously assemble into chiral crystals that span thousands of spinning organisms and persist for tens of hours. Combining experiment, hydrodynamic theory, and simulations, we demonstrate that the formation, dynamics, and dissolution of these living crystals are controlled by the natural development of the embryos. Remarkably, due to nonreciprocal force and torque exchange between the embryos, the living chiral crystals exhibit self-sustained oscillations with dynamic signatures recently predicted to emerge in materials with odd elasticity.
12/2/21Luca Giomi, Leiden UniversityTitle: Hydrodynamics and multi-scale order in confluent epithelia

Abstract: In this talk I will review our ongoing theoretical and experimental efforts toward deciphering the hydrodynamic behavior of confluent epithelia. The ability of epithelial cells to collectively flow lies at the heart of a myriad of processes that are instrumental for life, such as embryonic morphogenesis and wound healing, but also of life-threatening conditions, such as metastatic cancer. Understanding the physical origin of these mechanisms requires going beyond the current hydrodynamic theories of complex fluids and introducing a new theoretical framework, able to account for biomechanical activity as well as for scale-dependent liquid crystalline order.

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